Web Portals
1. OCTAD Drug Repurposing Portal
Repurpose drugs targeting precise cancer patient populations based on reversal of disease gene expression.
2. GPS Novel Compound Screening Portal
Virtual compound screening based on gene expression.
3. TransCell Portal
Predict 350,000 genomic and cellular response features based on gene expression.
R/Python Packages
1. octad Bioconductor
Repurpose drugs targeting precise cancer patient populations based on reversal of disease gene expression and a list of common bioinformatics modules such as DE analysis and pathway enrichment analysis.
2. sigatlas
Deconvolute cell composition of bulk RNA-seq samples based on reference normal cell types derived from tissue single cell atlas.
3. SPIDER
Large-scale prediction of cell surface protein abundance from single-cell transcriptomics.
4. bsAbsFinder
Bispecific antibody target identification using bulk, single cell, and spatial transcriptomics.
5. ViralCellDetector
Detect viral infection in cell line samples based on transcriptomics.